CDS

Accession Number TCMCG006C93875
gbkey CDS
Protein Id XP_013676169.1
Location join(12276639..12277175,12277246..12277309,12277385..12277518,12277595..12277678,12277766..12277840,12277910..12277981,12278066..12278139,12278328..12278380,12278492..12278601,12278747..12278815,12278890..12278964,12279066..12279158,12279252..12279331,12279426..12279525,12279648..12279934,12280048..12280096)
Gene LOC106380872
GeneID 106380872
Organism Brassica napus

Protein

Length 651aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA293435
db_source XM_013820715.2
Definition probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category A
Description Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB NOP family
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03009        [VIEW IN KEGG]
KEGG_ko ko:K14835        [VIEW IN KEGG]
EC 2.1.1.310        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway -
GOs GO:0000027        [VIEW IN EMBL-EBI]
GO:0000154        [VIEW IN EMBL-EBI]
GO:0000470        [VIEW IN EMBL-EBI]
GO:0001510        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005730        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006364        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006996        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008169        [VIEW IN EMBL-EBI]
GO:0008173        [VIEW IN EMBL-EBI]
GO:0008284        [VIEW IN EMBL-EBI]
GO:0008649        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009383        [VIEW IN EMBL-EBI]
GO:0009451        [VIEW IN EMBL-EBI]
GO:0009966        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010646        [VIEW IN EMBL-EBI]
GO:0016043        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016072        [VIEW IN EMBL-EBI]
GO:0016434        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0022607        [VIEW IN EMBL-EBI]
GO:0022613        [VIEW IN EMBL-EBI]
GO:0022618        [VIEW IN EMBL-EBI]
GO:0023051        [VIEW IN EMBL-EBI]
GO:0031167        [VIEW IN EMBL-EBI]
GO:0031974        [VIEW IN EMBL-EBI]
GO:0031981        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0034470        [VIEW IN EMBL-EBI]
GO:0034622        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0034660        [VIEW IN EMBL-EBI]
GO:0042127        [VIEW IN EMBL-EBI]
GO:0042254        [VIEW IN EMBL-EBI]
GO:0042255        [VIEW IN EMBL-EBI]
GO:0042273        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043233        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0043933        [VIEW IN EMBL-EBI]
GO:0044085        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044428        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048518        [VIEW IN EMBL-EBI]
GO:0048522        [VIEW IN EMBL-EBI]
GO:0048583        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050794        [VIEW IN EMBL-EBI]
GO:0065003        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070013        [VIEW IN EMBL-EBI]
GO:0070475        [VIEW IN EMBL-EBI]
GO:0070925        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0071826        [VIEW IN EMBL-EBI]
GO:0071840        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:0140102        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901796        [VIEW IN EMBL-EBI]
GO:1902531        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGGTTCTCACTCGCAGCAGCAAGAAGGCGCCGAAACCTCAAACCCCGCCGGTGAAGAACCTCTCGAAAGCTCAGACGCCTCCGCTATCGAAGGCGGAGAAACCACAGACTCTGACATCGAAGAAGGGAGCCAAGTCTCAGAAGAAACCTCCATTGAAGAAGCAGAAGAAGGATGTTATTGTTGTGGAGGAGGAAGATGACGACGAAGAGGTTTCCGATGTAGAATCAGAAGAGATAGATGAATCCGATGATGGAGAGAAAGGCTCTAACGGCTTTTTCTCTGACGACGACGGTGAAGAGCTCTTAAATGATAACTTCCTCGACGGTAGCGACGACGACGAAGAGGAGGAACGTTCGGATTCTGATGAGGCTTTGAGCTCTGATTCCGACTCGGATGAAGACGATATTCAGAAGGAATCTGAAGCTATTGACAGAGCGAAAGCGAAGGAGGAGGAAGATGCTGATGCTGAGCTTCTCGATTTCAACAAGGAAGATGGACCTGAGGAACATGAGACATTTCGCCTACCAACTCAAGAGGAGCTTGAAGAAGAAGCTCGTGGACCACCAGATCTTCCTCTGCTGCAGAGTAGAATCAAAGAGATTGTTAGAGCTCTGTCGAATTTTAACGTCTTGAGGCCAAATGGAGCCAGCAGGAAAGAATGCGTTGAACAGCTCAAATCTGATCTTGCTTCTTATTATGGCTATAACAGTTTTCTTATTGGCGCTTTGTTTGAGCTGTTTCCTCCTGTTGAACTTATGGAAATCATTCAAGCCTTTGAAAAGCAAAGGCCTACATCTATCCGGACAAACACACTTAAGACTCGAAGACGGGATCTTGCTGATGTGCTTCTGAACAGAGGAGTCAATCTAGACCCATTAAGCAAGTGGTCAAAAGTGGGACTTGTTGTTTATGATTCACAAGTGCCTATCGGTGCCACTCCTGAATATTTGGCTGGTTACTACATGCTTCAAGGTGCTAGTTCGTTTTTGCCAGTGATGGCCCTTGCCCCTAAAGAGAACGAGCGGATTGTGGACGTAGCTGCTGCTCCTGGTGGTAAAACAACTTACGTTGCTGCTCTAATGAAAAATACTGGTTTGATATTTGCGAACGAGATGAAAGTACCTAGGCTCAAGTCGCTAACTGCCAATCTGCATCGCATGGGGGTCACAAATACCATAGTTTGTAACTATGATGGAAGAGAGCTACCCAAGGTGTTAGGTGAGAGATCGGTTGACAGAGTATTGTTGGATGCACCTTGCAGTGGGACTGGGGTCATTTCGAAAGATGAATCAGTTAAAACTTCGAAATCTCTAGAGGATATAAAGAGATTTGCTCACTTGCAAAAGCAACTTTTACTAGCTGCTATTGATTTGGTGGATGCCACATCCAAAACTGGTGGATATATTGTTTACTCAACATGTTCACTTATGGTTGCTGAGAACGAAGCCGTAATTGACTATGCCCTGAAAAAGAGGAATGTTCAACTTGTTAAAACTGGACTCGACTTTGGCCAAGACGGATATAGAAGATTTAGAGAGCACCGGTTTCATCCATCTTTAAAGCAGACTAAACGTTTTTATCCTCATGTACACAACATGGACGGATTCTTTGTGGCAAAGCTGAAGAAAATGAGCAACATGAAACAATCGTCAGAGGATGATGATGAGGCGGTAGAAACTGTAGAACAAGCTGATGTGTCTAGTGATGATGATGAAGAAGCTGAGGCGATGGAAGAGATGGAGAAGCTTTCTGTTCCCAGTAAGCAACCCAAGGAAAACAAGGAGAGACTTGCAAAATCAAAGGAAAAGAAGAAAGGCAAAAAAGATGGAAAGTCAAAATCTAAAAATGTTGAGAGGAAGCCAAAGAAGAAGAGATCTGATTGGAAGAAGGAAATTGCTCAAGCTAGGGAAGAGAAACGAAGAGCCATGAGGGAGAACTCGAAGGGGAAGCAATGA
Protein:  
MVLTRSSKKAPKPQTPPVKNLSKAQTPPLSKAEKPQTLTSKKGAKSQKKPPLKKQKKDVIVVEEEDDDEEVSDVESEEIDESDDGEKGSNGFFSDDDGEELLNDNFLDGSDDDEEEERSDSDEALSSDSDSDEDDIQKESEAIDRAKAKEEEDADAELLDFNKEDGPEEHETFRLPTQEELEEEARGPPDLPLLQSRIKEIVRALSNFNVLRPNGASRKECVEQLKSDLASYYGYNSFLIGALFELFPPVELMEIIQAFEKQRPTSIRTNTLKTRRRDLADVLLNRGVNLDPLSKWSKVGLVVYDSQVPIGATPEYLAGYYMLQGASSFLPVMALAPKENERIVDVAAAPGGKTTYVAALMKNTGLIFANEMKVPRLKSLTANLHRMGVTNTIVCNYDGRELPKVLGERSVDRVLLDAPCSGTGVISKDESVKTSKSLEDIKRFAHLQKQLLLAAIDLVDATSKTGGYIVYSTCSLMVAENEAVIDYALKKRNVQLVKTGLDFGQDGYRRFREHRFHPSLKQTKRFYPHVHNMDGFFVAKLKKMSNMKQSSEDDDEAVETVEQADVSSDDDEEAEAMEEMEKLSVPSKQPKENKERLAKSKEKKKGKKDGKSKSKNVERKPKKKRSDWKKEIAQAREEKRRAMRENSKGKQ